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Graph motifs

Source: R/motifs.R
count_motifs.Rd

Graph motifs are small connected induced subgraphs with a well-defined structure. These functions search a graph for various motifs.

Usage

count_motifs(graph, size = 3, cut.prob = rep(0, size))

Arguments

graph

Graph object, the input graph.

size

The size of the motif.

cut.prob

Numeric vector giving the probabilities that the search graph is cut at a certain level. Its length should be the same as the size of the motif (the size argument). By default no cuts are made.

Value

count_motifs() returns a numeric scalar.

Details

count_motifs() calculates the total number of motifs of a given size in graph.

See also

isomorphism_class()

Other graph motifs: dyad_census(), motifs(), sample_motifs()

Examples

g <- sample_pa(100)
motifs(g, 3)
#>  [1]  NA  NA 281  NA  82   0   0   0   0   0   0   0   0   0   0   0
count_motifs(g, 3)
#> [1] 363
sample_motifs(g, 3)
#> [1] 360